I think i know what you mean.There will be 3 brackets,1 at the top and 1 at either side of the cooler.Once the bumper is off and you sit it in place you will see where these line up at the front of the car,we had to drill hole's in the bracket's of my mates to match the hole's on the car.
The standard fan really cant be used unless you position the radiator waaaaay back but thets not recomended as you want the rad and intercooler to be as close as possible for air flow to the rad.Also put's the rad too close to the turbo.A kenlowe or spal fan is what your ideally looking for bud

For example if you were to try and fit the intercooler without putting a fan in between i bet it would line up properly.