Will- Cutting it out is a shit idea IMO, and should run the turbo thru the charger, as long as the chargers a posi displacment one. Pointless with centrifugal one.
Mike- Its not the size thing thats the issue there (tho thats tiny), its the fact you used a type of supercharger thats TOTALLY pointless for a twincharged application

Why use a charger that only gives maximum boost at maximum rpm for something to give you more low down power?

You need a positive displacment charger to make any twincharged setup work.