Very difficult to see from the quality of the pics, if you get some better 1's sorted i'll do everything I can to assist.
From what I can see it would appear that 1 of the bolts needs shortned this would then allow the down pipe to marry up a lot easier.
Both davidch's and my own have custom 3" down pipes which will come into the equasion.
Davie (T28) is your down pipe standard? I know you will have the flexi section further down, but was it modified at the turbo end?